chore: initialize insar management system v2
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#!/usr/bin/env python3
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from __future__ import annotations
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import argparse
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from pathlib import Path
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import numpy as np
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from osgeo import gdal
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gdal.UseExceptions()
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DEFAULT_WAVELENGTH = 0.23793052222222222
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DEFAULT_NODATA = -9999.0
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def parse_args() -> argparse.Namespace:
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parser = argparse.ArgumentParser(
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description="Export ISCE2 geocoded displacement/coherence products to GeoTIFF."
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)
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parser.add_argument(
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"work_dir",
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type=Path,
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help="ISCE2 work directory containing interferogram/*.geo outputs",
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)
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parser.add_argument(
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"--output-dir",
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type=Path,
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default=None,
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help="Output directory for GeoTIFF files. Default: work_dir",
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)
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parser.add_argument(
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"--prefix",
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type=str,
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default=None,
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help="Output filename prefix. Default: work_dir basename",
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)
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parser.add_argument(
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"--wavelength",
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type=float,
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default=DEFAULT_WAVELENGTH,
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help="Radar wavelength in meters",
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)
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parser.add_argument(
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"--coh-threshold",
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type=float,
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default=0.05,
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help="Mask pixels with coherence below this threshold in *_disp.tif",
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)
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parser.add_argument(
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"--include-disp-full",
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action="store_true",
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help="Also export the unmasked displacement GeoTIFF for debugging",
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)
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return parser.parse_args()
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def write_geotiff(array: np.ndarray, ref_ds: gdal.Dataset, out_path: Path, nodata: float) -> None:
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out_path.parent.mkdir(parents=True, exist_ok=True)
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if out_path.exists():
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out_path.unlink()
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driver = gdal.GetDriverByName("GTiff")
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ds = driver.Create(
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str(out_path),
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ref_ds.RasterXSize,
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ref_ds.RasterYSize,
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1,
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gdal.GDT_Float32,
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options=["COMPRESS=LZW", "TILED=YES"],
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)
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ds.SetGeoTransform(ref_ds.GetGeoTransform())
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ds.SetProjection(ref_ds.GetProjection())
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band = ds.GetRasterBand(1)
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band.SetNoDataValue(nodata)
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band.WriteArray(array.astype(np.float32))
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ds.FlushCache()
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ds = None
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def export_products(
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work_dir: Path,
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output_dir: Path,
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prefix: str,
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wavelength: float,
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coh_threshold: float,
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include_disp_full: bool = False,
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nodata: float = DEFAULT_NODATA,
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) -> dict[str, Path]:
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unw_path = work_dir / "interferogram" / "filt_topophase.unw.geo.vrt"
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cor_path = work_dir / "interferogram" / "topophase.cor.geo.vrt"
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if not unw_path.exists():
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raise FileNotFoundError(f"Missing unwrapped product: {unw_path}")
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if not cor_path.exists():
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raise FileNotFoundError(f"Missing coherence product: {cor_path}")
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unw_ds = gdal.Open(str(unw_path))
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cor_ds = gdal.Open(str(cor_path))
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if unw_ds is None or cor_ds is None:
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raise RuntimeError("Failed to open ISCE2 geo products with GDAL.")
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amp = unw_ds.GetRasterBand(1).ReadAsArray().astype(np.float32)
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phase = unw_ds.GetRasterBand(2).ReadAsArray().astype(np.float32)
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coh_band = 2 if cor_ds.RasterCount >= 2 else 1
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coh = cor_ds.GetRasterBand(coh_band).ReadAsArray().astype(np.float32)
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coh_valid = coh > 0
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disp_m = phase * wavelength / (4.0 * np.pi)
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disp_m_full = disp_m.copy()
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mask = (coh < coh_threshold) | (amp == 0)
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disp_m[mask] = nodata
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disp_m_full[amp == 0] = nodata
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coh_out = coh.copy()
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coh_out[~coh_valid] = nodata
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output_dir.mkdir(parents=True, exist_ok=True)
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out_disp = output_dir / f"{prefix}_disp.tif"
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out_coh = output_dir / f"{prefix}_coh.tif"
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write_geotiff(disp_m, unw_ds, out_disp, nodata)
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write_geotiff(coh_out, cor_ds, out_coh, nodata)
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out_disp_full = None
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if include_disp_full:
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out_disp_full = output_dir / f"{prefix}_disp_full.tif"
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write_geotiff(disp_m_full, unw_ds, out_disp_full, nodata)
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valid_disp = disp_m[disp_m != nodata]
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valid_coh = coh_out[coh_out != nodata]
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valid_full = disp_m_full[disp_m_full != nodata] if include_disp_full else np.array([], dtype=np.float32)
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print(f"Work dir: {work_dir}")
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print(f"Output prefix: {prefix}")
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print(f"Coherence threshold: {coh_threshold}")
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print(f"Unwrap support ratio: {(amp != 0).mean()*100:.2f}%")
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print(f"Coherence support ratio: {coh_valid.mean()*100:.2f}%")
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print(f"Masked disp ratio: {(disp_m != nodata).mean()*100:.2f}%")
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if valid_disp.size:
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print(f"Masked disp range: [{valid_disp.min():.4f}, {valid_disp.max():.4f}] m")
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if include_disp_full and valid_full.size:
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print(f"Full disp range: [{valid_full.min():.4f}, {valid_full.max():.4f}] m")
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if valid_coh.size:
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print(f"Coherence range: [{valid_coh.min():.4f}, {valid_coh.max():.4f}]")
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print(f"Wrote: {out_disp}")
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if out_disp_full is not None:
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print(f"Wrote: {out_disp_full}")
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print(f"Wrote: {out_coh}")
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unw_ds = None
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cor_ds = None
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outputs: dict[str, Path] = {
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"disp": out_disp,
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"coh": out_coh,
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}
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if out_disp_full is not None:
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outputs["disp_full"] = out_disp_full
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return outputs
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def main() -> int:
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args = parse_args()
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work_dir = args.work_dir.resolve()
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output_dir = args.output_dir.resolve() if args.output_dir else work_dir
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prefix = args.prefix or work_dir.name
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export_products(
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work_dir=work_dir,
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output_dir=output_dir,
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prefix=prefix,
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wavelength=args.wavelength,
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coh_threshold=args.coh_threshold,
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include_disp_full=args.include_disp_full,
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)
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return 0
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if __name__ == "__main__":
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raise SystemExit(main())
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